DESCRIPTIONThis module generates a ball and stick representation of a molecule represented in a pyramid. The bonds are represented as cylinders and the atoms as spheres. If the radius is greater than 0.5 then the bonds are not generated.
The optional colormap can be used to color the spheres. If it is omitted, the values used are as follows:
ATOM NUMBER COLOR Hydrogen 1 pale white Carbon 6 pale green Nitrogen 7 blue Oxygen 8 red Fluorine 9 green Phosphorus 15 violet Sulfur 16 yellow Chlorine 17 green Bromine 35 gray
Constraints: n-D compression
Constraints: n-compression type
The source molecule.
Optional: This port is optional.
A colormap to use to color the atoms. The value from the colormap is the "color" data variable from the chemistry pyramid. The ReadPDB module fills this value with the atomic number of the atom.
Ball radius normalized to Van der Waals radius.
Complexity (or resolution) of spheres and cylinders. 0 is lowest complexity, which results in a crude representation of the geometry that renders quickly; increasing the complexity gives a higher quality representation.
Sphere and Cylinder geometry.
SEE ALSOReadPDB, Ball, AtomicSurf, Render.
© The Numerical Algorithms Group Ltd, Oxford UK. 2000